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    scaf1 SR-related CTD-associated factor 1 [ Danio rerio (zebrafish) ]

    Gene ID: 553490, updated on 27-Mar-2024

    Summary

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    Official Symbol
    scaf1provided by ZNC
    Official Full Name
    SR-related CTD-associated factor 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-120215-214
    See related
    Ensembl:ENSDARG00000054010 AllianceGenome:ZFIN:ZDB-GENE-120215-214
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch73-378o21.1
    Summary
    Predicted to enable RNA polymerase II C-terminal domain binding activity. Orthologous to human SCAF1 (SR-related CTD associated factor 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (32477638..32490562)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (32346081..32358848)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene si:ch211-195b15.7 Neighboring gene insulin-like Neighboring gene transient receptor potential cation channel, subfamily M, member 4a Neighboring gene prostatic spermine-binding protein-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Scaf1 promotes respiratory supercomplexes and metabolic efficiency in zebrafish. García-Poyatos C, et al. EMBO Rep, 2020 Jul 3. PMID 32496654, Free PMC Article
    2. Melanoma genome evolution across species. Kansler ER, et al. BMC Genomics, 2017 Feb 7. PMID 28173755, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Scaf1 promotes respiratory supercomplexes and metabolic efficiency in zebrafish.
      Title: Scaf1 promotes respiratory supercomplexes and metabolic efficiency in zebrafish.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA polymerase II C-terminal domain binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    splicing factor, arginine/serine-rich 19

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      32477638..32490562
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005164068.4 → XP_005164125.1  splicing factor, arginine/serine-rich 19 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BBI6

    2. XM_005164069.4 → XP_005164126.1  splicing factor, arginine/serine-rich 19 isoform X2

      UniProtKB/TrEMBL
      A0A8M2BBC7, I3ITF2
      Related
      ENSDARP00000126216.1, ENSDART00000151261.3
    Nucleotide Protein Strain
    Heading Accession and Version

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